Course Identification

Advanced light microscopy
20183341

Lecturers and Teaching Assistants

Dr. Vyacheslav Kalchenko
N/A

Course Schedule and Location

2018
First Semester
15/11/2017-1/2/2018. Locations at comments. ,
15/11/2017
22

Field of Study, Course Type and Credit Points

Life Sciences: Laboratory; Elective; 1.50 points
Life Sciences (Systems Biology Track): 1.50 points
Life Sciences (Molecular and Cellular Neuroscience Track): 1.50 points
Life Sciences (Brain Sciences: Systems, Computational and Cognitive Neuroscience Track): 1.50 points

Comments

Theory:
15/11/2017 (14:15-16:00), Room A, FGS
29/11/2017 (14:15-17:00), Room A, FGS
6/12/2017 (14:15-17:00), Room A, FGS
13/12/2017 (14:15-17:00), Room A, FGS
27/12/2017 (14:15-17:00), Room , FGS
3/1/2018 (14:15-16:00), Room A, FGS
10/1/2018 (14:15-17:00), Room 4, FGS
16/1/2018 (14:15-16:00), Room 4, FGS

The practical part: 16-18/1/2018 (11:00-17:00), At various labs

Concluding Session: 1/2/2018 13:00-16:00 Room , FGS

Prerequisites

No

Restrictions

18

Language of Instruction

English

Attendance and participation

Obligatory

Grade Type

Pass / Fail

Grade Breakdown (in %)

25%
50%
25%

Evaluation Type

Seminar

Scheduled date 1

N/A
N/A
-
N/A

Estimated Weekly Independent Workload (in hours)

3

Syllabus

This course is aimed at providing with an understanding of a variety of advanced light microscopes as research tools. Students will be exposed to topics in basic transmitted light microscopes, fluorescent microscopes (upright and inverted) including wide field, confocal and two-photon microscopes, light-sheet microscope (SPIM) those adapted to high-throughput experiments, as well as live and intravital (in vivo) microscopy.

Some of the topics to be discussed in this course range from optics, the unique properties of each microscope, sample preparation, and up to a variety of applications. Importantly, the course will enable the participants to design work strategies for a variety of microscopes, with the goal of providing with a global understanding regarding how to choose the appropriate technology for ones needs.

Most of the topics in the theoretical part of the course will be presented by the students. Each student will present once for 30-40 minutes. Guidance and advice will be provided in advance.  This theoretical part will be followed by hands-on demonstrations of microscope assembly and by 3x6 hours sessions at a microscope of choice (the practical part at the end of the first semester).

The practical part, which will be performed using microscopes located throughout the main campus, will take place at the level of a research group of choice (pending space). A given project will involve planning the experiment, preparing samples, collecting data, image analysis and eventually presenting data in class. During the project presentations students will define for a given microscope several applications and subsequently suggest the parameters and specifications needed to make the microscope suitable for achieving the tasks of interest.

Learning Outcomes

Upon successful completion of the course students will be able to:

  • Teach the principles of a microscope system of choice.
  • Demonstrate proficiency in common instruments in advanced light microscopy.
  • Analyze samples under variety of microscopes
  • Describe an array of methods in advanced light microscopy.
  • Evaluate their own experimental data.
  • Discuss the relevant methods, their potential and limitations in molecular cell biology

Reading List

N/A

Website

N/A