Course Identification

Coding in neural systems
20203342

Lecturers and Teaching Assistants

Prof. Michail Tsodyks, Dr. Mikhail Katkov
N/A

Course Schedule and Location

2020
Second Semester
Wednesday, 13:15 - 16:00, Wolfson Auditorium
22/04/2020

Field of Study, Course Type and Credit Points

Life Sciences: Lecture; Elective; Regular; 2.00 points
Physical Sciences: Lecture; Elective; Regular; 2.00 points
Life Sciences (Molecular and Cellular Neuroscience Track): Lecture; Elective; Regular; 2.00 points
Life Sciences (Brain Sciences: Systems, Computational and Cognitive Neuroscience Track): Lecture; Elective; Core; 2.00 points
Life Sciences (Computational and Systems Biology Track): Lecture; Elective; Regular; 2.00 points
Mathematics and Computer Science: Lecture; Elective; Regular; 2.00 points
Mathematics and Computer Science (Systems Biology / Bioinformatics): Lecture; Elective; Regular; 2.00 points
Mathematics and Computer Science (Applied Mathematics: Lecture; Elective; Regular; 2.00 points
Mathematics and Computer Science (Computer Vision / Machine Learning: Lecture; Elective; Regular; 2.00 points

Comments

Will be taught via Zoom.

Prerequisites

No

Restrictions

30

Language of Instruction

English

Attendance and participation

Expected and Recommended

Grade Type

Numerical (out of 100)

Grade Breakdown (in %)

50%
50%

Evaluation Type

Take-home exam

Scheduled date 1

13/08/2020
N/A
-
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Estimated Weekly Independent Workload (in hours)

N/A

Syllabus

Neural decoding 
Introduction: discrimination and estimation
Statistical bounds: Fisher information and the Cramér Rao bound
Population coding. Narrow vs wide tuning curves.
Noise correlations: beneficial or detrimental?
Maximum likelihood and Bayesian decoding
 
The efficient coding hypothesis and principles of efficient sensory coding 
 
The efficient coding hypothesis
Introduction: Barlow's efficient coding hypothesis
Information theory: Shannon entropy, differential entropy
Efficient coding in a single neuron (Laughlin)
Laughlin's theory reformulated using mutual information 
 
Principles of efficient sensory coding in populations of neurons
Brief review of the visual system
Multidimensional Gaussian stimuli: linear encoding and principal component analysis
Scaling laws of natural images and retinal receptive fields (Atick and Redlich)
Independent component analysis, receptive fields in the primary visual cortex

Learning Outcomes

Upon successful completion of the course, the students will be able to:

Understand neural encoding and decoding in the brain

Reading List

N/A

Website

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